The single cell laboratory work
Karman fellowship 2023: ย The single cell laboratory work I learned in Oxford with support of the Karman fellowship funding and START funding RWTH Aachen.
This work was the basis of multiple selected presentations at international conferences. One of my key findings is a specific immune reaction, which co-localizes with small nerve fibers, which are indicative of good survival in PDAC patients. This key finding created my interest and origin of my second research line: the spatiality of the immune environment. I started collecting fresh tumor tissue samples and turned them into single cell suspensions.
START funding RWTH University Hospital Aachen
This grant provides funding for two years and we perform multiplexed immunohistochemistry and characterize the immune tumor microenvironment in Cholangiocarcinoma. We dissect molecular pathways, and we identify differentially expressed genes by isolating RNA.
Selected oral presentation & Poster prize@CCF Annual Conference, Salt Lake City, USA
Nerve Fibers in the Tumor Microenvironment as a novel biomarker for oncological outcome in patients undergoing surgery for cholangiocarcinoma.
Besides the characteristic aggressive feature of cholangiocarcinoma called perinueral invasion which is identified in histology slides very often. I discovered protective nerve fibers as well. This phenomenon I called: nerve fiber density.
Future work will be the validation in larger cohorts and hopefully this biomarker can be integrated in the future in the pathology report of each resected patient.
Selected oral presentation@ENSCCA Meeting Rome, Italy: Nerve fibers in cholangiocarcinoma collaborative proposal.
o Pre-print: TIGIT drives the immunosuppressive environment by downregulation of metalloproteinases MMP2 and MMP14 in perihilar cholangiocarcinoma.
Authors: Lara Heij, Konrad Reichel, Willem de Koning, Jan Bednarsch, Xiuxiang Tan, Julia Campello Deierl, Marian Clahsen-van Groningen, Tarick Al-Masri, Ronald van Dam, Juan Garcia Vallejo, Florian Ulmer, Sven Lang, Tom Luedde, Flavio G. Rocha, Edgar Dahl, Danny Jonigk, Mark Kuehnel, Shivan Sivakumar, Ulf Neumann
bioRxiv: https://biorxiv.org/cgi/content/short/2023.08.14.553195v1
This manuscript was enabled by START funding from the University Hospital Aachen. I performed multiplexed immunohistochemistry and characterized the immune TME in CCA. To dissect the molecular pathways, we identified differentially expressed genes by isolating RNA. We collaborated with Professor Jonigk and Professor Kramann (both RWTH Aachen). This work has provided preliminary data and know-how to perform further phenotyping of low and high NFD patients.